Detailed information of SNP:
|
SNP ID:
sf1206770356(Gbrowse)
Chromosome: chr12 Position: 6770356 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 65.82% | 34.18% |
| All Indica | 799 | 48.19% | 51.81% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 24.53% | 75.47% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 42.18% | 57.82% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206770356 | C->T | INTERGENIC | None |