Detailed information of SNP:
|
SNP ID:
sf1206796759(Gbrowse)
Chromosome: chr12 Position: 6796759 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 61.12% | 38.88% |
| All Indica | 797 | 97.62% | 2.38% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206796759 | A->C | INTERGENIC | None |