Detailed information of SNP:
|
SNP ID:
sf1206806753(Gbrowse)
Chromosome: chr12 Position: 6806753 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 65.25% | 34.75% |
| All Indica | 798 | 91.85% | 8.15% |
| All Japonica | 496 | 22.38% | 77.62% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 334 | 25.75% | 74.25% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206806753 | G->A | INTERGENIC | None |