Detailed information of SNP:
|
SNP ID:
sf1206836114(Gbrowse)
Chromosome: chr12 Position: 6836114 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1353 | 62.60% | 37.40% |
| All Indica | 785 | 95.41% | 4.59% |
| All Japonica | 457 | 7.22% | 92.78% |
| Aus | 61 | 70.49% | 29.51% |
| Indica I | 370 | 94.59% | 5.41% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 203 | 95.07% | 4.93% |
| Temperate Japonica | 300 | 7.00% | 93.00% |
| Tropical Japonica | 92 | 5.43% | 94.57% |
| Japonica Intermediate | 65 | 10.77% | 89.23% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 36 | 55.56% | 44.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206836114 | C->T | LOC_Os12g12410(LOC_Os12g12410.1) | Synonymous |