Detailed information of SNP:
|
SNP ID:
sf1206850987(Gbrowse)
Chromosome: chr12 Position: 6850987 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1351 | 97.41% | 2.59% |
| All Indica | 788 | 97.97% | 2.03% |
| All Japonica | 442 | 96.61% | 3.39% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 98.39% | 1.61% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 205 | 98.05% | 1.95% |
| Temperate Japonica | 292 | 96.23% | 3.77% |
| Tropical Japonica | 87 | 97.70% | 2.30% |
| Japonica Intermediate | 63 | 96.83% | 3.17% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206850987 | A->G | LOC_Os12g12450(LOC_Os12g12450.1) | INTRON |