Detailed information of SNP:
|
SNP ID:
sf1206938423(Gbrowse)
Chromosome: chr12 Position: 6938423 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 61.41% | 38.59% |
| All Indica | 783 | 96.30% | 3.70% |
| All Japonica | 497 | 6.44% | 93.56% |
| Aus | 66 | 60.61% | 39.39% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 197 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 8.66% | 91.34% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206938423 | T->C | INTERGENIC | None |