Detailed information of SNP:
|
SNP ID:
sf1206940753(Gbrowse)
Chromosome: chr12 Position: 6940753 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 70.27% | 29.73% |
| All Indica | 796 | 48.74% | 51.26% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 23.86% | 76.14% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 210 | 56.67% | 43.33% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206940753 | C->A | INTERGENIC | None |