Detailed information of SNP:
|
SNP ID:
sf1206952661(Gbrowse)
Chromosome: chr12 Position: 6952661 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 71.90% | 28.10% |
| All Indica | 795 | 64.40% | 35.60% |
| All Japonica | 497 | 79.28% | 20.72% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 86.36% | 13.64% |
| Indica II | 212 | 22.17% | 77.83% |
| Indica Intermediate | 209 | 67.94% | 32.06% |
| Temperate Japonica | 335 | 81.19% | 18.81% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206952661 | A->G | INTERGENIC | None |