Detailed information of SNP:
|
SNP ID:
sf1206959565(Gbrowse)
Chromosome: chr12 Position: 6959565 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 64.56% | 35.44% |
| All Indica | 792 | 44.70% | 55.30% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 370 | 19.46% | 80.54% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 209 | 52.15% | 47.85% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206959565 | A->C | INTERGENIC | None |