Detailed information of SNP:
|
SNP ID:
sf1206963662(Gbrowse)
Chromosome: chr12 Position: 6963662 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 59.38% | 40.62% |
| All Indica | 797 | 93.22% | 6.78% |
| All Japonica | 482 | 3.94% | 96.06% |
| Aus | 62 | 53.23% | 46.77% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 327 | 3.36% | 96.64% |
| Tropical Japonica | 88 | 3.41% | 96.59% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206963662 | C->A | INTERGENIC | None |