Detailed information of SNP:
|
SNP ID:
sf1206966621(Gbrowse)
Chromosome: chr12 Position: 6966621 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1356 | 97.49% | 2.51% |
| All Indica | 747 | 95.72% | 4.28% |
| All Japonica | 490 | 100.00% | 0.00% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 341 | 96.19% | 3.81% |
| Indica II | 210 | 94.29% | 5.71% |
| Indica Intermediate | 196 | 96.43% | 3.57% |
| Temperate Japonica | 329 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206966621 | G->T | INTERGENIC | None |