Detailed information of SNP:
|
SNP ID:
sf1206967516(Gbrowse)
Chromosome: chr12 Position: 6967516 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 92.57% | 7.43% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 493 | 78.90% | 21.10% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 80.42% | 19.58% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 67 | 67.16% | 32.84% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206967516 | A->G | INTERGENIC | None |