Detailed information of SNP:
|
SNP ID:
sf1206973464(Gbrowse)
Chromosome: chr12 Position: 6973464 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 79.67% | 20.33% |
| All Indica | 789 | 65.27% | 34.73% |
| All Japonica | 495 | 98.59% | 1.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 52.69% | 47.31% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 204 | 63.24% | 36.76% |
| Temperate Japonica | 333 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1206973464 | T->A | LOC_Os12g12650(LOC_Os12g12650.1) | INTRON |