Detailed information of SNP:
|
SNP ID:
sf1207039063(Gbrowse)
Chromosome: chr12 Position: 7039063 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1380 | 87.61% | 12.39% |
| All Indica | 761 | 78.19% | 21.81% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 360 | 97.22% | 2.78% |
| Indica II | 198 | 37.88% | 62.12% |
| Indica Intermediate | 203 | 83.74% | 16.26% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207039063 | G->A | LOC_Os12g12770(LOC_Os12g12770.1) | INTRON |