Detailed information of SNP:
|
SNP ID:
sf1207041950(Gbrowse)
Chromosome: chr12 Position: 7041950 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 88.03% | 11.97% |
| All Indica | 785 | 79.11% | 20.89% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 73.50% | 26.50% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 206 | 77.18% | 22.82% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207041950 | C->T | LOC_Os12g12770(LOC_Os12g12770.1) | Synonymous |