Detailed information of SNP:
|
SNP ID:
sf1207068373(Gbrowse)
Chromosome: chr12 Position: 7068373 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 68.30% | 31.70% |
| All Indica | 797 | 46.68% | 53.32% |
| All Japonica | 491 | 98.57% | 1.43% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 374 | 22.73% | 77.27% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 210 | 51.43% | 48.57% |
| Temperate Japonica | 331 | 98.19% | 1.81% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207068373 | C->A | LOC_Os12g12810(LOC_Os12g12810.1) | INTRON |