Detailed information of SNP:
|
SNP ID:
sf1207086596(Gbrowse)
Chromosome: chr12 Position: 7086596 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 95.20% | 4.80% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 495 | 89.70% | 10.30% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 92 | 54.35% | 45.65% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207086596 | A->G | INTERGENIC | None |