Detailed information of SNP:
|
SNP ID:
sf1207087139(Gbrowse)
Chromosome: chr12 Position: 7087139 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 94.91% | 5.09% |
| All Indica | 796 | 98.87% | 1.13% |
| All Japonica | 496 | 90.12% | 9.88% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 56.99% | 43.01% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207087139 | A->T | INTERGENIC | None |