Detailed information of SNP:
|
SNP ID:
sf1207087539(Gbrowse)
Chromosome: chr12 Position: 7087539 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 95.34% | 4.66% |
| All Indica | 797 | 99.12% | 0.88% |
| All Japonica | 496 | 89.92% | 10.08% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 55.91% | 44.09% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207087539 | T->C | INTERGENIC | None |