Detailed information of SNP:



SNP ID: sf1207109560(Gbrowse)

Chromosome: chr12

Position: 7109560
Major allele: G

Minor allele: T

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of T(minor allele)
All1419 76.39% 23.61%
All Indica799 58.70% 41.30%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I375 56.80% 43.20%
Indica II213 53.52% 46.48%
Indica Intermediate211 67.30% 32.70%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 88.10% 11.90%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1207109560 G->T INTERGENIC None