Detailed information of SNP:
SNP ID:
sf1207109560(Gbrowse)
Chromosome: chr12 Position: 7109560 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1419 | 76.39% | 23.61% |
All Indica | 799 | 58.70% | 41.30% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 56.80% | 43.20% |
Indica II | 213 | 53.52% | 46.48% |
Indica Intermediate | 211 | 67.30% | 32.70% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1207109560 | G->T | INTERGENIC | None |