Detailed information of SNP:
SNP ID:
sf1207113104(Gbrowse)
Chromosome: chr12 Position: 7113104 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1418 | 76.23% | 23.77% |
All Indica | 798 | 58.52% | 41.48% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 67 | 98.51% | 1.49% |
Indica I | 374 | 56.95% | 43.05% |
Indica II | 213 | 53.05% | 46.95% |
Indica Intermediate | 211 | 66.82% | 33.18% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1207113104 | C->T | LOC_Os12g12860(LOC_Os12g12860.1) | INTRON |