Detailed information of SNP:



SNP ID: sf1207113104(Gbrowse)

Chromosome: chr12

Position: 7113104
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 76.23% 23.77%
All Indica798 58.52% 41.48%
All Japonica497 100.00% 0.00%
Aus67 98.51% 1.49%
Indica I374 56.95% 43.05%
Indica II213 53.05% 46.95%
Indica Intermediate211 66.82% 33.18%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 88.10% 11.90%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1207113104 C->T LOC_Os12g12860(LOC_Os12g12860.1) INTRON