Detailed information of SNP:
|
SNP ID:
sf1207119312(Gbrowse)
Chromosome: chr12 Position: 7119312 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 94.60% | 5.40% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 486 | 84.98% | 15.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 327 | 83.49% | 16.51% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 65 | 80.00% | 20.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207119312 | A->G | LOC_Os12g12870(LOC_Os12g12870.1) | Non-Synonymous SNP |