Detailed information of SNP:
|
SNP ID:
sf1207139587(Gbrowse)
Chromosome: chr12 Position: 7139587 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 89.21% | 10.79% |
| All Indica | 762 | 81.23% | 18.77% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 362 | 93.09% | 6.91% |
| Indica II | 203 | 55.67% | 44.33% |
| Indica Intermediate | 197 | 85.79% | 14.21% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207139587 | G->A | INTERGENIC | None |