Detailed information of SNP:
|
SNP ID:
sf1207148039(Gbrowse)
Chromosome: chr12 Position: 7148039 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 83.71% | 16.29% |
| All Indica | 795 | 74.72% | 25.28% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 374 | 83.42% | 16.58% |
| Indica II | 212 | 65.57% | 34.43% |
| Indica Intermediate | 209 | 68.42% | 31.58% |
| Temperate Japonica | 335 | 93.73% | 6.27% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207148039 | G->A | INTERGENIC | None |