Detailed information of SNP:
|
SNP ID:
sf1207168279(Gbrowse)
Chromosome: chr12 Position: 7168279 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 57.26% | 42.74% |
| All Indica | 798 | 89.10% | 10.90% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 374 | 83.16% | 16.84% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207168279 | G->A | LOC_Os12g12934(LOC_Os12g12934.1) | UTR_3_PRIME |