Detailed information of SNP:
|
SNP ID:
sf1207182953(Gbrowse)
Chromosome: chr12 Position: 7182953 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 60.93% | 39.07% |
| All Indica | 798 | 96.99% | 3.01% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207182953 | T->C | LOC_Os12g12970(LOC_Os12g12970.1) | INTRON |