Detailed information of SNP:
|
SNP ID:
sf1207183793(Gbrowse)
Chromosome: chr12 Position: 7183793 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1333 | 80.35% | 19.65% |
| All Indica | 713 | 63.96% | 36.04% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 320 | 50.62% | 49.38% |
| Indica II | 195 | 75.38% | 24.62% |
| Indica Intermediate | 198 | 74.24% | 25.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207183793 | G->T | LOC_Os12g12970(LOC_Os12g12970.1) | INTRON |