Detailed information of SNP:
|
SNP ID:
sf1207190252(Gbrowse)
Chromosome: chr12 Position: 7190252 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 55.78% | 44.22% |
| All Indica | 799 | 88.74% | 11.26% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 84.27% | 15.73% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207190252 | G->A | INTERGENIC | None |