Detailed information of SNP:
|
SNP ID:
sf1207205944(Gbrowse)
Chromosome: chr12 Position: 7205944 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 51.16% | 48.84% |
| All Indica | 799 | 86.86% | 13.14% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 375 | 86.40% | 13.60% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 26.83% | 73.17% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207205944 | T->C | INTERGENIC | None |