Detailed information of SNP:
|
SNP ID:
sf1207218137(Gbrowse)
Chromosome: chr12 Position: 7218137 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 91.41% | 8.59% |
| All Indica | 782 | 90.79% | 9.21% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 63 | 57.14% | 42.86% |
| Indica I | 363 | 90.91% | 9.09% |
| Indica II | 211 | 91.00% | 9.00% |
| Indica Intermediate | 208 | 90.38% | 9.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207218137 | C->T | LOC_Os12g13020(LOC_Os12g13020.1) | Non-Synonymous SNP |