Detailed information of SNP:
SNP ID:
sf1207218172(Gbrowse)
Chromosome: chr12 Position: 7218172 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1403 | 95.30% | 4.70% |
All Indica | 784 | 92.73% | 7.27% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 67 | 86.57% | 13.43% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 201 | 75.62% | 24.38% |
Indica Intermediate | 208 | 96.63% | 3.37% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1207218172 | C->T | LOC_Os12g13020(LOC_Os12g13020.1) | Non-Synonymous SNP |