Detailed information of SNP:



SNP ID: sf1207218172(Gbrowse)

Chromosome: chr12

Position: 7218172
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1403 95.30% 4.70%
All Indica784 92.73% 7.27%
All Japonica497 100.00% 0.00%
Aus67 86.57% 13.43%
Indica I375 99.73% 0.27%
Indica II201 75.62% 24.38%
Indica Intermediate208 96.63% 3.37%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1207218172 C->T LOC_Os12g13020(LOC_Os12g13020.1) Non-Synonymous SNP