Detailed information of SNP:
|
SNP ID:
sf1207229226(Gbrowse)
Chromosome: chr12 Position: 7229226 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 50.04% | 49.96% |
| All Indica | 799 | 22.15% | 77.85% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 21.87% | 78.13% |
| Indica II | 213 | 7.98% | 92.02% |
| Indica Intermediate | 211 | 36.97% | 63.03% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207229226 | T->A | INTERGENIC | None |