Detailed information of SNP:
|
SNP ID:
sf1207245650(Gbrowse)
Chromosome: chr12 Position: 7245650 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 89.43% | 10.57% |
| All Indica | 799 | 88.24% | 11.76% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 86.67% | 13.33% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207245650 | C->A | INTERGENIC | None |