Detailed information of SNP:
|
SNP ID:
sf1207254463(Gbrowse)
Chromosome: chr12 Position: 7254463 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1394 | 92.54% | 7.46% |
| All Indica | 781 | 92.32% | 7.68% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 61 | 57.38% | 42.62% |
| Indica I | 364 | 92.86% | 7.14% |
| Indica II | 211 | 91.00% | 9.00% |
| Indica Intermediate | 206 | 92.72% | 7.28% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207254463 | T->C | LOC_Os12g13070(LOC_Os12g13070.1) | Synonymous |