Detailed information of SNP:
|
SNP ID:
sf1207273764(Gbrowse)
Chromosome: chr12 Position: 7273764 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 90.60% | 9.40% |
| All Indica | 779 | 90.89% | 9.11% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 36.36% | 63.64% |
| Indica I | 357 | 90.76% | 9.24% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 12 | 41.67% | 58.33% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207273764 | G->A | INTERGENIC | None |