Detailed information of SNP:
|
SNP ID:
sf1207326423(Gbrowse)
Chromosome: chr12 Position: 7326423 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 67.66% | 32.34% |
| All Indica | 797 | 44.29% | 55.71% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 35.83% | 64.17% |
| Indica II | 212 | 50.47% | 49.53% |
| Indica Intermediate | 211 | 53.08% | 46.92% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207326423 | C->T | INTERGENIC | None |