Detailed information of SNP:
|
SNP ID:
sf1207345923(Gbrowse)
Chromosome: chr12 Position: 7345923 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1340 | 57.91% | 42.09% |
| All Indica | 727 | 26.82% | 73.18% |
| All Japonica | 496 | 97.78% | 2.22% |
| Aus | 62 | 82.26% | 17.74% |
| Indica I | 350 | 26.00% | 74.00% |
| Indica II | 178 | 30.90% | 69.10% |
| Indica Intermediate | 199 | 24.62% | 75.38% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207345923 | A->G | LOC_Os12g13180(LOC_Os12g13180.1) | Synonymous |