Detailed information of SNP:
|
SNP ID:
sf1207349842(Gbrowse)
Chromosome: chr12 Position: 7349842 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 91.54% | 8.46% |
| All Indica | 789 | 91.25% | 8.75% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 53.85% | 46.15% |
| Indica I | 369 | 89.16% | 10.84% |
| Indica II | 211 | 92.89% | 7.11% |
| Indica Intermediate | 209 | 93.30% | 6.70% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207349842 | C->T | LOC_Os12g13200(LOC_Os12g13200.1) | Synonymous |