Detailed information of SNP:
|
SNP ID:
sf1207350043(Gbrowse)
Chromosome: chr12 Position: 7350043 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 59.59% | 40.41% |
| All Indica | 798 | 93.73% | 6.27% |
| All Japonica | 497 | 3.42% | 96.58% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207350043 | T->C | LOC_Os12g13200(LOC_Os12g13200.1) | Synonymous |