Detailed information of SNP:
|
SNP ID:
sf1207357255(Gbrowse)
Chromosome: chr12 Position: 7357255 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1352 | 82.54% | 17.46% |
| All Indica | 732 | 68.99% | 31.01% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 333 | 57.06% | 42.94% |
| Indica II | 197 | 75.13% | 24.87% |
| Indica Intermediate | 202 | 82.67% | 17.33% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207357255 | T->A | INTERGENIC | None |