Detailed information of SNP:
|
SNP ID:
sf1207360621(Gbrowse)
Chromosome: chr12 Position: 7360621 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 60.03% | 39.97% |
| All Indica | 798 | 96.12% | 3.88% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 66 | 65.15% | 34.85% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207360621 | C->T | INTERGENIC | None |