Detailed information of SNP:



SNP ID: sf1207360621(Gbrowse)

Chromosome: chr12

Position: 7360621
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1416 60.03% 39.97%
All Indica798 96.12% 3.88%
All Japonica497 2.01% 97.99%
Aus66 65.15% 34.85%
Indica I374 98.93% 1.07%
Indica II213 92.96% 7.04%
Indica Intermediate211 94.31% 5.69%
Temperate Japonica335 0.60% 99.40%
Tropical Japonica94 5.32% 94.68%
Japonica Intermediate68 4.41% 95.59%
Group VI/Aromatic14 64.29% 35.71%
Intermediate41 51.22% 48.78%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1207360621 C->T INTERGENIC None