Detailed information of SNP:
|
SNP ID:
sf1207379947(Gbrowse)
Chromosome: chr12 Position: 7379947 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 51.49% | 48.51% |
| All Indica | 795 | 80.38% | 19.62% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 374 | 78.88% | 21.12% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 208 | 66.83% | 33.17% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207379947 | A->G | LOC_Os12g13270(LOC_Os12g13270.1) | INTRON |