Detailed information of SNP:
|
SNP ID:
sf1207381166(Gbrowse)
Chromosome: chr12 Position: 7381166 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1313 | 63.82% | 36.18% |
| All Indica | 696 | 33.48% | 66.52% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 18.31% | 81.69% |
| Indica II | 150 | 72.67% | 27.33% |
| Indica Intermediate | 180 | 31.67% | 68.33% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207381166 | A->T | LOC_Os12g13270(LOC_Os12g13270.1) | INTRON |