Detailed information of SNP:
|
SNP ID:
sf1207385489(Gbrowse)
Chromosome: chr12 Position: 7385489 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 91.20% | 8.80% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 487 | 76.39% | 23.61% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 77.71% | 22.29% |
| Tropical Japonica | 92 | 70.65% | 29.35% |
| Japonica Intermediate | 63 | 77.78% | 22.22% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207385489 | G->A | LOC_Os12g13280(LOC_Os12g13280.1) | INTRON |