Detailed information of SNP:
|
SNP ID:
sf1207391698(Gbrowse)
Chromosome: chr12 Position: 7391698 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 93.05% | 6.95% |
| All Indica | 782 | 93.99% | 6.01% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 65 | 55.38% | 44.62% |
| Indica I | 363 | 93.66% | 6.34% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 208 | 93.27% | 6.73% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207391698 | G->C | INTERGENIC | None |