Detailed information of SNP:
|
SNP ID:
sf1207395446(Gbrowse)
Chromosome: chr12 Position: 7395446 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 56.78% | 43.22% |
| All Indica | 796 | 86.31% | 13.69% |
| All Japonica | 497 | 3.02% | 96.98% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 212 | 64.15% | 35.85% |
| Indica Intermediate | 209 | 89.47% | 10.53% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207395446 | T->C | INTERGENIC | None |