Detailed information of SNP:
|
SNP ID:
sf1207395770(Gbrowse)
Chromosome: chr12 Position: 7395770 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 69.37% | 30.63% |
| All Indica | 788 | 56.47% | 43.53% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 370 | 65.68% | 34.32% |
| Indica II | 209 | 51.67% | 48.33% |
| Indica Intermediate | 209 | 44.98% | 55.02% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207395770 | C->T | INTERGENIC | None |