Detailed information of SNP:
|
SNP ID:
sf1207397017(Gbrowse)
Chromosome: chr12 Position: 7397017 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 67.00% | 33.00% |
| All Indica | 798 | 53.13% | 46.87% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 374 | 63.37% | 36.63% |
| Indica II | 213 | 48.83% | 51.17% |
| Indica Intermediate | 211 | 39.34% | 60.66% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207397017 | C->T | INTERGENIC | None |