Detailed information of SNP:
|
SNP ID:
sf1207409660(Gbrowse)
Chromosome: chr12 Position: 7409660 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 82.09% | 17.91% |
| All Indica | 798 | 77.44% | 22.56% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 85.60% | 14.40% |
| Indica II | 212 | 59.43% | 40.57% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207409660 | C->T | INTERGENIC | None |