Detailed information of SNP:
|
SNP ID:
sf1207452692(Gbrowse)
Chromosome: chr12 Position: 7452692 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1319 | 92.87% | 7.13% |
| All Indica | 717 | 89.54% | 10.46% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 58 | 72.41% | 27.59% |
| Indica I | 327 | 82.26% | 17.74% |
| Indica II | 197 | 97.97% | 2.03% |
| Indica Intermediate | 193 | 93.26% | 6.74% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1207452692 | G->A | INTERGENIC | None |